Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38247

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2895
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27


Found at i:685 original size:18 final size:18

Alignment explanation


    Indices: 649--686  Score: 51
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        639 TGATTTTCAG

                          *   
        649 GAAGATAAACAAAGGGTT
          1 GAAGATAAACAAAGAGTT

                               
        667 GAAGA-AAACAATAGAGTT
          1 GAAGATAAACAA-AGAGTT

              
        685 GA
          1 GA

        687 GATCTTATCT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  17    6  0.33
  18   12  0.67

ACGTcount: A:0.53, C:0.05, G:0.26, T:0.16


Consensus pattern (18 bp):   
GAAGATAAACAAAGAGTT
Done.