Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38145

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3393
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:546 original size:39 final size:39

Alignment explanation


    Indices: 488--604  Score: 135
    Period size: 39  Copynumber: 3.0  Consensus size: 39

        478 GAGTCACCTG

                          *      *         *       
        488 CTTCAACTTCACTGCTTAACAGTGCTAAACCGGACTCTA
          1 CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA

                  *              *      *          
        527 CTTCAAATTCACTGGTTAACACTGCTAATCCAGACTCTA
          1 CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA

                *      *      *         *     *    
        566 CTTCTACTTCATTGGTTATCAATGCTAAGCCAGAATCTA
          1 CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA

        605 AAGCTAGTCT


Statistics
Matches: 66,  Mismatches: 12, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  39   66  1.00

ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32


Consensus pattern (39 bp):   
CTTCAACTTCACTGGTTAACAATGCTAAACCAGACTCTA
Done.