Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34464

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1056
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24


Found at i:998 original size:21 final size:21

Alignment explanation


    Indices: 955--1000  Score: 65
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        945 GATGAAGGAT

                   *          *  
        955 GAAAACATGAAGCAAAGCGAC
          1 GAAAACACGAAGCAAAGCAAC

                             *   
        976 GAAAACACGAAGCAAAGTAAC
          1 GAAAACACGAAGCAAAGCAAC

                
        997 GAAA
          1 GAAA

       1001 TCCCTCCCCC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.57, C:0.17, G:0.22, T:0.04


Consensus pattern (21 bp):   
GAAAACACGAAGCAAAGCAAC
Done.