Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35063

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 311

Length: 519
ACGTcount: A:0.21, C:0.20, G:0.33, T:0.25


Found at i:245 original size:18 final size:18

Alignment explanation


    Indices: 218--254  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        208 CATAATTCTA

                              
        218 GAGGCAGAGGTGGACGTG
          1 GAGGCAGAGGTGGACGTG

                 *        *   
        236 GAGGCGGAGGTGGAGGTG
          1 GAGGCAGAGGTGGACGTG

             
        254 G
          1 G

        255 TCGGGGACGG


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.19, C:0.08, G:0.62, T:0.11


Consensus pattern (18 bp):   
GAGGCAGAGGTGGACGTG
Done.