Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05998

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 460

Length: 768
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30


Found at i:61 original size:9 final size:9

Alignment explanation


    Indices: 47--71  Score: 50
    Period size: 9  Copynumber: 2.8  Consensus size: 9

         37 AAGATTCCGT

                     
         47 CTTCTTCTC
          1 CTTCTTCTC

                     
         56 CTTCTTCTC
          1 CTTCTTCTC

                   
         65 CTTCTTC
          1 CTTCTTC

         72 AGCTCTTATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   16  1.00

ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56


Consensus pattern (9 bp):   
CTTCTTCTC
Done.