Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_36623

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 249
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29


Found at i:230 original size:19 final size:19

Alignment explanation


    Indices: 206--245  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        196 AGCTCCCATG

                               
        206 TAGCTCCACACCAGCTCAT
          1 TAGCTCCACACCAGCTCAT

                  ***          
        225 TAGCTCGGGACCAGCTCAT
          1 TAGCTCCACACCAGCTCAT

              
        244 TA
          1 TA

        246 TTAG


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23


Consensus pattern (19 bp):   
TAGCTCCACACCAGCTCAT
Done.