Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_13118

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 714

Length: 1191
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26


Found at i:239 original size:18 final size:18

Alignment explanation


    Indices: 216--251  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        206 TACAACAGTT

                     *        
        216 TCATCAACACCATCATCA
          1 TCATCAACAACATCATCA

                              
        234 TCATCAACAACATCATCA
          1 TCATCAACAACATCATCA

        252 AAACCAACAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.42, C:0.36, G:0.00, T:0.22


Consensus pattern (18 bp):   
TCATCAACAACATCATCA
Done.