Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_07284

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4405
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30


Found at i:146 original size:6 final size:6

Alignment explanation


    Indices: 135--165  Score: 53
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        125 CAGGAAGCGA

                                               
        135 TGCCCT TGCCCT TGCCCT TGCCCT TGGCCCT
          1 TGCCCT TGCCCT TGCCCT TGCCCT T-GCCCT

        166 GACGCTTTCC


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   6   19  0.79
   7    5  0.21

ACGTcount: A:0.00, C:0.48, G:0.19, T:0.32


Consensus pattern (6 bp):   
TGCCCT

Done.