Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31435

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 715

Length: 1193
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.24


Found at i:249 original size:21 final size:21

Alignment explanation


    Indices: 234--280  Score: 67
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        224 ATGGCTCCGT

                                 
        234 GAAGAGCAACGCTGGCTAAGA
          1 GAAGAGCAACGCTGGCTAAGA

                    *              
        255 GAAGAGCAGCGCTGGCTTAAAGA
          1 GAAGAGCAACGCTGGC-T-AAGA

               
        278 GAA
          1 GAA

        281 AGAATCGCTA


Statistics
Matches: 23,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  21   15  0.65
  22    1  0.04
  23    7  0.30

ACGTcount: A:0.38, C:0.17, G:0.34, T:0.11


Consensus pattern (21 bp):   
GAAGAGCAACGCTGGCTAAGA
Done.