Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24839

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 547

Length: 912
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22


Found at i:88 original size:22 final size:22

Alignment explanation


    Indices: 49--91  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

         39 CCTTTATGTT

                  *               
         49 GGTCACTTGTCTTCGAGGACAA
          1 GGTCACGTGTCTTCGAGGACAA

                                  
         71 GGTCACGTGATCTT-GAGGACA
          1 GGTCACGTG-TCTTCGAGGACA

         92 TGTTTAGCAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  22   15  0.79
  23    4  0.21

ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26


Consensus pattern (22 bp):   
GGTCACGTGTCTTCGAGGACAA
Done.