Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_31506

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 942
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24


Found at i:438 original size:18 final size:18

Alignment explanation


    Indices: 405--439  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        395 GCAAAAGCGG

                     * *      
        405 GAAGAAGAATAGTAACAA
          1 GAAGAAGAACAATAACAA

                             
        423 GAAGAAGAACAATAACA
          1 GAAGAAGAACAATAACA

        440 GCGACAATAA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.63, C:0.09, G:0.20, T:0.09


Consensus pattern (18 bp):   
GAAGAAGAACAATAACAA
Done.