Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17313

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2322
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.23


Found at i:490 original size:42 final size:42

Alignment explanation


    Indices: 424--507  Score: 123
    Period size: 42  Copynumber: 2.0  Consensus size: 42

        414 TGCTGAGTTA

                                          * *         
        424 GGTAAAGATGAGAAATTTGAGGCAGATGGTGGTCAGGAACCG
          1 GGTAAAGATGAGAAATTTGAGGCAGATGGTAGCCAGGAACCG

                   *      *    *                      
        466 GGTAAAGTTGAGAATTTTGGGGCAGATGGTAGCCAGGAACCG
          1 GGTAAAGATGAGAAATTTGAGGCAGATGGTAGCCAGGAACCG

        508 CCTACTAAAG


Statistics
Matches: 37,  Mismatches: 5, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  42   37  1.00

ACGTcount: A:0.31, C:0.11, G:0.38, T:0.20


Consensus pattern (42 bp):   
GGTAAAGATGAGAAATTTGAGGCAGATGGTAGCCAGGAACCG
Done.