Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18934

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 248

Length: 414
ACGTcount: A:0.23, C:0.32, G:0.16, T:0.29


Found at i:139 original size:6 final size:6

Alignment explanation


    Indices: 93--137  Score: 58
    Period size: 6  Copynumber: 7.7  Consensus size: 6

         83 CTTGCTATTC

                                                           *      
         93 ACCC-A ACCCTAA A-CCAA ACCCAA ACCCAA ACCCAA ACCCCA ACCC
          1 ACCCAA ACCC-AA ACCCAA ACCCAA ACCCAA ACCCAA ACCCAA ACCC

        138 CACCCCCACT


Statistics
Matches: 36,  Mismatches: 1, Indels: 5
        0.86            0.02        0.12

Matches are distributed among these distances:
   5    7  0.19
   6   27  0.75
   7    2  0.06

ACGTcount: A:0.44, C:0.53, G:0.00, T:0.02


Consensus pattern (6 bp):   
ACCCAA
Done.