Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19492

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11013
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.30


Found at i:6495 original size:6 final size:6

Alignment explanation


    Indices: 6484--6521  Score: 76
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       6474 AGAAAACCTT

                                                        
       6484 GATGAG GATGAG GATGAG GATGAG GATGAG GATGAG GA
          1 GATGAG GATGAG GATGAG GATGAG GATGAG GATGAG GA

       6522 GATGTCCGGA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   32  1.00

ACGTcount: A:0.34, C:0.00, G:0.50, T:0.16


Consensus pattern (6 bp):   
GATGAG

Done.