Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_24806

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 439

Length: 732
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25


Found at i:408 original size:21 final size:21

Alignment explanation


    Indices: 378--418  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        368 AAGCAGAGAT

                 *               
        378 GGTGGTGGAAGGGGTGGAAAC
          1 GGTGGCGGAAGGGGTGGAAAC

                       *        
        399 GGTGGCGGAAGTGGTGGAAA
          1 GGTGGCGGAAGGGGTGGAAA

        419 AGGTAGCAAC


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.24, C:0.05, G:0.56, T:0.15


Consensus pattern (21 bp):   
GGTGGCGGAAGGGGTGGAAAC
Done.