Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_22336

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 330
ACGTcount: A:0.33, C:0.17, G:0.38, T:0.12


Found at i:248 original size:60 final size:60

Alignment explanation


    Indices: 127--248  Score: 147
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        117 GAGGAGCCGT

                          *           *    *               **       *   
        127 GGAGGTCAGACAAGGAAGGAGCAACTGGGGAGAGAAGGGTACCAGGAGCTGGGAAGCAAA
          1 GGAGGTCAGACAAGAAAGGAGCAACTAGGGACAGAAGGGTACCAGGAAATGGGAAGAAAA

                                             *                    **     
        187 GGAGGTCAGACAAGAAAGGAGCAGA-TAGGGACTGAAGGGTACCAGGAAATGGGGCGAAAA
          1 GGAGGTCAGACAAGAAAGGAGCA-ACTAGGGACAGAAGGGTACCAGGAAATGGGAAGAAAA

              
        247 GG
          1 GG

        249 TGGACTGAGT


Statistics
Matches: 52,  Mismatches: 9, Indels: 2
        0.83            0.14        0.03

Matches are distributed among these distances:
  60   51  0.98
  61    1  0.02

ACGTcount: A:0.38, C:0.12, G:0.43, T:0.07


Consensus pattern (60 bp):   
GGAGGTCAGACAAGAAAGGAGCAACTAGGGACAGAAGGGTACCAGGAAATGGGAAGAAAA
Done.