Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40217

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 204
ACGTcount: A:0.33, C:0.19, G:0.33, T:0.14


Found at i:186 original size:21 final size:21

Alignment explanation


    Indices: 136--190  Score: 65
    Period size: 21  Copynumber: 2.6  Consensus size: 21

        126 ACTTAGAGCG

                      *   *      
        136 GAGGCAGCAGAGAGGGAGGCA
          1 GAGGCAGCAGCGAGAGAGGCA

             *  *               *
        157 GCGGTAGCAGCGAGAGAGGCT
          1 GAGGCAGCAGCGAGAGAGGCA

                         
        178 GAGGCAGCAGCGA
          1 GAGGCAGCAGCGA

        191 TGGCAGTAGA


Statistics
Matches: 27,  Mismatches: 7, Indels: 0
        0.79            0.21        0.00

Matches are distributed among these distances:
  21   27  1.00

ACGTcount: A:0.29, C:0.18, G:0.49, T:0.04


Consensus pattern (21 bp):   
GAGGCAGCAGCGAGAGAGGCA
Done.