Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_35148

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 570

Length: 951
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34


Found at i:938 original size:19 final size:19

Alignment explanation


    Indices: 910--948  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        900 GAATTTAGCT

                               
        910 GACAAAGAGAGAGGACTAA
          1 GACAAAGAGAGAGGACTAA

                 *             
        929 GACAAGGAGAGAGGACTAA
          1 GACAAAGAGAGAGGACTAA

             
        948 G
          1 G

        949 TAA


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.49, C:0.10, G:0.36, T:0.05


Consensus pattern (19 bp):   
GACAAAGAGAGAGGACTAA
Done.