Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19357

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 934

Length: 1557
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26


Found at i:479 original size:3 final size:3

Alignment explanation


    Indices: 466--503  Score: 67
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        456 TGAGCTTGAG

                 *                                            
        466 GAA GTA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
          1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA

        504 GCAACTGGTG


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   3   33  1.00

ACGTcount: A:0.63, C:0.00, G:0.34, T:0.03


Consensus pattern (3 bp):   
GAA

Done.