Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04402

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1926
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27


Found at i:1136 original size:23 final size:25

Alignment explanation


    Indices: 1105--1152  Score: 82
    Period size: 24  Copynumber: 2.0  Consensus size: 25

       1095 TTCTGTTATT

                                     
       1105 AACAGAGA-TTCCCGATCTTTGCCA
          1 AACAGAGATTTCCCGATCTTTGCCA

                                     
       1129 AACA-AGATTTCCCGATCTTTGCCA
          1 AACAGAGATTTCCCGATCTTTGCCA

       1153 CATCAAAGCT


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  23    3  0.13
  24   20  0.87

ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27


Consensus pattern (25 bp):   
AACAGAGATTTCCCGATCTTTGCCA

Done.