Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_28062

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 942
ACGTcount: A:0.24, C:0.25, G:0.25, T:0.27


Found at i:907 original size:6 final size:6

Alignment explanation


    Indices: 896--926  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        886 ATTGATGTAT

                                      *         
        896 CTGCTC CTGCTC CTGCTC CTGCTT CTGCTC C
          1 CTGCTC CTGCTC CTGCTC CTGCTC CTGCTC C

        927 CACTGGCTGG


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.00, C:0.48, G:0.16, T:0.35


Consensus pattern (6 bp):   
CTGCTC

Done.