Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10399

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1974
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:943 original size:39 final size:39

Alignment explanation


    Indices: 900--976  Score: 118
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        890 CCCCAGTCAG

                              *  *                 
        900 TCAACAAAATGCAAAATTTACTAGAATGCTTAGTGGGAT
          1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT

                       *               *          
        939 TCAACAAAATGGAAAATTAACCAGAATTCTTAGTGGGA
          1 TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGA

        977 CTGAAAGGAT


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  39   34  1.00

ACGTcount: A:0.43, C:0.13, G:0.18, T:0.26


Consensus pattern (39 bp):   
TCAACAAAATGCAAAATTAACCAGAATGCTTAGTGGGAT
Done.