Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_15835

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 401

Length: 669
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.23


Found at i:60 original size:3 final size:3

Alignment explanation


    Indices: 54--81  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         44 TCGGCAGCAG

                                                 
         54 CCA CCA CCA CCA CCA CCA CCA CCA CCA C
          1 CCA CCA CCA CCA CCA CCA CCA CCA CCA C

         82 AAACAACCTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00


Consensus pattern (3 bp):   
CCA

Done.