Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09675

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 324

Length: 540
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27


Found at i:502 original size:6 final size:6

Alignment explanation


    Indices: 491--520  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

        481 AACCATGAAT

                                         *    
        491 CTAGCA CTAGCA CTAGCA CTAGCA CAAGCA
          1 CTAGCA CTAGCA CTAGCA CTAGCA CTAGCA

        521 ATGGAAGTAC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.37, C:0.33, G:0.17, T:0.13


Consensus pattern (6 bp):   
CTAGCA

Done.