Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_23047

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 320

Length: 534
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22


Found at i:374 original size:33 final size:33

Alignment explanation


    Indices: 332--462  Score: 174
    Period size: 33  Copynumber: 4.0  Consensus size: 33

        322 GGAGATCATA

                                  *          
        332 GAGATCCAACAGAAATTAGAATGCCTGGAAATG
          1 GAGATCCAACAGAAATTAGAATACCTGGAAATG

                        *    *    *          
        365 GAGATCCAACAGGAATTGGAATGCCTGGAAATG
          1 GAGATCCAACAGAAATTAGAATACCTGGAAATG

               *   *    *                   *
        398 GAGCTCCTACAGGAATTAGAATACCTGGAAATA
          1 GAGATCCAACAGAAATTAGAATACCTGGAAATG

                                             
        431 GAGATCCAACA-AGAATTAGAATACCTGGAAAT
          1 GAGATCCAACAGA-AATTAGAATACCTGGAAAT

        463 CGGGGTCCCA


Statistics
Matches: 87,  Mismatches: 10, Indels: 2
        0.88            0.10        0.02

Matches are distributed among these distances:
  33   87  1.00

ACGTcount: A:0.41, C:0.16, G:0.24, T:0.19


Consensus pattern (33 bp):   
GAGATCCAACAGAAATTAGAATACCTGGAAATG
Done.