Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_04627

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 291

Length: 486
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24


Found at i:278 original size:24 final size:24

Alignment explanation


    Indices: 246--304  Score: 93
    Period size: 24  Copynumber: 2.5  Consensus size: 24

        236 CTTCACTGCC

                                     
        246 GAAACCACCAGCTACTTTAC-CGCA
          1 GAAACCACCAGCTACTTTACTC-CA

                                   *
        270 GAAACCACCAGCTACTTTACTCCG
          1 GAAACCACCAGCTACTTTACTCCA

                       
        294 GAAACCACCAG
          1 GAAACCACCAG

        305 AAACACCGGT


Statistics
Matches: 33,  Mismatches: 1, Indels: 2
        0.92            0.03        0.06

Matches are distributed among these distances:
  24   32  0.97
  25    1  0.03

ACGTcount: A:0.34, C:0.37, G:0.14, T:0.15


Consensus pattern (24 bp):   
GAAACCACCAGCTACTTTACTCCA
Done.