Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26178

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3660
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27


Found at i:2914 original size:21 final size:20

Alignment explanation


    Indices: 2884--2923  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 20

       2874 CATTTTGAAT

                                
       2884 GGTTCCGAGGAAAATGGTGG
          1 GGTTCCGAGGAAAATGGTGG

                          *     
       2904 GGTTCACGAGGAAATTGGTG
          1 GGTTC-CGAGGAAAATGGTG

       2924 ACAGTTACAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  20    5  0.28
  21   13  0.72

ACGTcount: A:0.25, C:0.10, G:0.42, T:0.23


Consensus pattern (20 bp):   
GGTTCCGAGGAAAATGGTGG

Done.