Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34374

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 838

Length: 1397
ACGTcount: A:0.28, C:0.08, G:0.37, T:0.26


Found at i:346 original size:3 final size:3

Alignment explanation


    Indices: 340--377  Score: 58
    Period size: 3  Copynumber: 12.7  Consensus size: 3

        330 AGGAGGAGGA

                                *        *                    
        340 GGT GGT GGT GGT GGT AGT GGT GAT GGT GGT GGT GGT GG
          1 GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GGT GG

        378 AAGTGGTAGC


Statistics
Matches: 31,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   3   31  1.00

ACGTcount: A:0.05, C:0.00, G:0.63, T:0.32


Consensus pattern (3 bp):   
GGT

Done.