Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_38863

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2454
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.25


Found at i:2238 original size:3 final size:3

Alignment explanation


    Indices: 2227--2276  Score: 55
    Period size: 3  Copynumber: 16.7  Consensus size: 3

       2217 GCAGCTTTCC

                 *            *   *   *   *                                
       2227 CAG CTG CAG CAG CAA CAA CAA CAA CAG CAG CAG CAG CAG CAG CAG CAG
          1 CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG CAG

              
       2275 CA
          1 CA

       2277 ACAACAGTCG


Statistics
Matches: 43,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   3   43  1.00

ACGTcount: A:0.40, C:0.34, G:0.24, T:0.02


Consensus pattern (3 bp):   
CAG

Done.