Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_41316

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 637

Length: 1062
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22


Found at i:969 original size:21 final size:22

Alignment explanation


    Indices: 943--984  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 22

        933 GGAGTTTTTG

                                  
        943 GAAAGGAAAA-GAGAAAGGAAA
          1 GAAAGGAAAATGAGAAAGGAAA

                            *    
        964 GAAAGGAAAATGAGAAGGGAA
          1 GAAAGGAAAATGAGAAAGGAA

        985 GGGACTTTAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  21   10  0.53
  22    9  0.47

ACGTcount: A:0.62, C:0.00, G:0.36, T:0.02


Consensus pattern (22 bp):   
GAAAGGAAAATGAGAAAGGAAA

Done.