Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_09759

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29


Found at i:54 original size:6 final size:6

Alignment explanation


    Indices: 43--71  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

         33 CTCTCTTCAC

                                             
         43 CACCAT CACCAT CACCAT CACCAT CACCA
          1 CACCAT CACCAT CACCAT CACCAT CACCA

         72 CCGCCCCCGT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.34, C:0.52, G:0.00, T:0.14


Consensus pattern (6 bp):   
CACCAT

Done.