Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_33630

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6047
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29


Found at i:184 original size:18 final size:18

Alignment explanation


    Indices: 145--188  Score: 61
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        135 AGAAGAAGCA

                              
        145 GAAGAAGAGGAGGACGAC
          1 GAAGAAGAGGAGGACGAC

                 *        *  *
        163 GAAGAGGAGGAGGAGGAG
          1 GAAGAAGAGGAGGACGAC

                    
        181 GAAGAAGA
          1 GAAGAAGA

        189 AGAAGGTAGG


Statistics
Matches: 22,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  18   22  1.00

ACGTcount: A:0.45, C:0.05, G:0.50, T:0.00


Consensus pattern (18 bp):   
GAAGAAGAGGAGGACGAC
Done.