Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18767

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1272
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28


Found at i:115 original size:3 final size:3

Alignment explanation


    Indices: 107--144  Score: 76
    Period size: 3  Copynumber: 12.7  Consensus size: 3

         97 CCAGAAGCTG

                                                              
        107 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
          1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT

        145 ACGTTATCAT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   35  1.00

ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66


Consensus pattern (3 bp):   
CTT

Done.