Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_05805

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3405
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28


Found at i:2500 original size:54 final size:54

Alignment explanation


    Indices: 2413--2517  Score: 165
    Period size: 54  Copynumber: 1.9  Consensus size: 54

       2403 ACAGTCTGTT

                *                       *       *                 
       2413 GGTATTACTGTTCACACCAAAACTCAGCTGGGTGAATACAGTGATCTGAATGAG
          1 GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAATGAG

                             **                                
       2467 GGTACTACTGTTCACACTGAAACTCAGCAGGGTGAACACAGTGATCTGAAT
          1 GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAAT

       2518 TCTCAACAGG


Statistics
Matches: 46,  Mismatches: 5, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  54   46  1.00

ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25


Consensus pattern (54 bp):   
GGTACTACTGTTCACACCAAAACTCAGCAGGGTGAACACAGTGATCTGAATGAG
Done.