Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02572

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 964

Length: 1608
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27


Found at i:1224 original size:30 final size:30

Alignment explanation


    Indices: 1188--1247  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1178 TTCATCACAG

                                          
       1188 TTTGTCCACTGGTTCTCCCATTCCTTCGCC
          1 TTTGTCCACTGGTTCTCCCATTCCTTCGCC

                                          
       1218 TTTGTCCACTGGTTCTCCCATTCCTTCGCC
          1 TTTGTCCACTGGTTCTCCCATTCCTTCGCC

       1248 GACTGTTTCC


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.07, C:0.40, G:0.13, T:0.40


Consensus pattern (30 bp):   
TTTGTCCACTGGTTCTCCCATTCCTTCGCC

Done.