Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_17240

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1953
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:463 original size:54 final size:54

Alignment explanation


    Indices: 398--500  Score: 152
    Period size: 54  Copynumber: 1.9  Consensus size: 54

        388 TTTGATGGTG

                        *         *                               
        398 TTGAGCTTCCTGCTGGAGAAGATACATCCATCCCATGGTTTGAAAATATGACCA
          1 TTGAGCTTCCTGATGGAGAAGAGACATCCATCCCATGGTTTGAAAATATGACCA

                 *           **    *                         
        452 TTGAGGTTCCTGATGGATTAGAGGCATCCATCCCATGGTTTGAAAATAT
          1 TTGAGCTTCCTGATGGAGAAGAGACATCCATCCCATGGTTTGAAAATAT

        501 TTCAGAGAGT


Statistics
Matches: 43,  Mismatches: 6, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  54   43  1.00

ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30


Consensus pattern (54 bp):   
TTGAGCTTCCTGATGGAGAAGAGACATCCATCCCATGGTTTGAAAATATGACCA
Done.