Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_20688

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 507

Length: 846
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21


Found at i:249 original size:12 final size:12

Alignment explanation


    Indices: 234--263  Score: 51
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        224 AGGAACATTT

                   *    
        234 CGAGGATTTCTA
          1 CGAGGATATCTA

                        
        246 CGAGGATATCTA
          1 CGAGGATATCTA

                  
        258 CGAGGA
          1 CGAGGA

        264 ACTAAGCAAG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  12   17  1.00

ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23


Consensus pattern (12 bp):   
CGAGGATATCTA
Done.