Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_34616

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 327

Length: 545
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29


Found at i:91 original size:12 final size:12

Alignment explanation


    Indices: 74--98  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

         64 CTGCTACAAA

                        
         74 TTCATTAACTTC
          1 TTCATTAACTTC

                        
         86 TTCATTAACTTC
          1 TTCATTAACTTC

             
         98 T
          1 T

         99 CTTCTTGACA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52


Consensus pattern (12 bp):   
TTCATTAACTTC
Done.