Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_11053

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 453

Length: 756
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25


Found at i:257 original size:3 final size:3

Alignment explanation


    Indices: 249--273  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        239 AGAACAAAAG

                                             
        249 ATC ATC ATC ATC ATC ATC ATC ATC A
          1 ATC ATC ATC ATC ATC ATC ATC ATC A

        274 AAGAGAAGCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.36, C:0.32, G:0.00, T:0.32


Consensus pattern (3 bp):   
ATC

Done.