Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_27508

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 565

Length: 942
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:801 original size:3 final size:3

Alignment explanation


    Indices: 793--843  Score: 50
    Period size: 3  Copynumber: 17.0  Consensus size: 3

        783 CAAGCCTGTT

                        *             *          *    *                 
        793 TCA TCA TCA ACA TCA TCA TCG TCCA -CA CCA TTA TCA TCA TCA TCA
          1 TCA TCA TCA TCA TCA TCA TCA T-CA TCA TCA TCA TCA TCA TCA TCA

                   
        838 TCA TCA
          1 TCA TCA

        844 CTGTCATCTC


Statistics
Matches: 39,  Mismatches: 7, Indels: 4
        0.78            0.14        0.08

Matches are distributed among these distances:
   2    2  0.05
   3   36  0.92
   4    1  0.03

ACGTcount: A:0.33, C:0.35, G:0.02, T:0.29


Consensus pattern (3 bp):   
TCA

Done.