Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_19633

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 223

Length: 372
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23


Found at i:72 original size:20 final size:20

Alignment explanation


    Indices: 47--86  Score: 80
    Period size: 20  Copynumber: 2.0  Consensus size: 20

         37 GCCAGTGTTG

                                
         47 TGCTTCTTGTGTCATGGTCC
          1 TGCTTCTTGTGTCATGGTCC

                                
         67 TGCTTCTTGTGTCATGGTCC
          1 TGCTTCTTGTGTCATGGTCC

         87 GCATGAGTTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.05, C:0.25, G:0.25, T:0.45


Consensus pattern (20 bp):   
TGCTTCTTGTGTCATGGTCC
Done.