Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02998

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2832
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29


Found at i:2378 original size:69 final size:69

Alignment explanation


    Indices: 2295--2436  Score: 239
    Period size: 69  Copynumber: 2.1  Consensus size: 69

       2285 CTGTTCTAGA

                                **                                           
       2295 TGAAAGTACAAGTACTATGACTGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG
          1 TGAAAGTACAAGTACTATGAAGGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG

                
       2360 CAGT
         66 CAGT

                    *                        *                             * 
       2364 TGAAAGTAGAAGTACTATGAAGGATTCTCTAGTGGTGTTGGATGAGGATTCACCAACCATGGATG
          1 TGAAAGTACAAGTACTATGAAGGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG

                
       2429 CAGT
         66 CAGT

                
       2433 TGAA
          1 TGAA

       2437 GTTGCCATTA


Statistics
Matches: 68,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  69   68  1.00

ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27


Consensus pattern (69 bp):   
TGAAAGTACAAGTACTATGAAGGATTCTCTAGTAGTGTTGGATGAGGATTCACCAACCATGGACG
CAGT
Done.