Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_18631

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3918
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24


Found at i:863 original size:12 final size:12

Alignment explanation


    Indices: 846--880  Score: 61
    Period size: 12  Copynumber: 2.9  Consensus size: 12

        836 TGGAAACTTC

                        
        846 GAAGAACAAGAA
          1 GAAGAACAAGAA

                        
        858 GAAGAACAAGAA
          1 GAAGAACAAGAA

                  *    
        870 GAAGAATAAGA
          1 GAAGAACAAGA

        881 GTGGAAGGAC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   22  1.00

ACGTcount: A:0.66, C:0.06, G:0.26, T:0.03


Consensus pattern (12 bp):   
GAAGAACAAGAA
Done.