Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_26953

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2433
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26


Found at i:2378 original size:36 final size:36

Alignment explanation


    Indices: 2301--2370  Score: 104
    Period size: 36  Copynumber: 1.9  Consensus size: 36

       2291 CTGCACATAA

                           *                    
       2301 ATTTCCAGTCCCAGTGAACCCAATGATGAAACAAAC
          1 ATTTCCAGTCCCAGTAAACCCAATGATGAAACAAAC

                     *        *         *     
       2337 ATTTCCAGTTCCAGTAAATCCAATGATGCAACAA
          1 ATTTCCAGTCCCAGTAAACCCAATGATGAAACAA

       2371 GCTTTTCCTG


Statistics
Matches: 30,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  36   30  1.00

ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23


Consensus pattern (36 bp):   
ATTTCCAGTCCCAGTAAACCCAATGATGAAACAAAC
Done.