Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_08226

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 525

Length: 876
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23


Found at i:667 original size:6 final size:6

Alignment explanation


    Indices: 636--666  Score: 53
    Period size: 6  Copynumber: 5.2  Consensus size: 6

        626 CCCCAGTGTT

                                         *      
        636 CCAGGA CCAGGA CCAGGA CCAGGA CGAGGA C
          1 CCAGGA CCAGGA CCAGGA CCAGGA CCAGGA C

        667 GGTCAAGAGG


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   6   24  1.00

ACGTcount: A:0.32, C:0.32, G:0.35, T:0.00


Consensus pattern (6 bp):   
CCAGGA
Done.