Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_10525

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 552

Length: 921
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25


Found at i:672 original size:105 final size:105

Alignment explanation


    Indices: 484--673  Score: 299
    Period size: 105  Copynumber: 1.8  Consensus size: 105

        474 CCGTCAGCAA

                                                                             
        484 AGTTTGCCACACCAATTCAGATTGTCACCTACACCATCTATTGGTACATTATCGGATACACCTAT
          1 AGTTTGCCACACCAATTCAGATTGTCACCTACACCATCTATTGGTACATTATCGGATACACCTAT

                  *      *                          
        549 GACGGGGCAGAAACGAGATGTATTTGAGAAGAGTATTGAG
         66 GACGGGACAGAAAAGAGATGTATTTGAGAAGAGTATTGAG

                       *     ** *           *              *                 
        589 AGTTTGCCACAGCAATTTGGGTTGTCACCTACCCCATCTATTGGTACGTTATCGGATACACCTAT
          1 AGTTTGCCACACCAATTCAGATTGTCACCTACACCATCTATTGGTACATTATCGGATACACCTAT

                    *           
        654 GACGGGACGGAAAAGAGATG
         66 GACGGGACAGAAAAGAGATG

        674 CTCAAGATGC


Statistics
Matches: 76,  Mismatches: 9, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
 105   76  1.00

ACGTcount: A:0.29, C:0.21, G:0.23, T:0.26


Consensus pattern (105 bp):   
AGTTTGCCACACCAATTCAGATTGTCACCTACACCATCTATTGGTACATTATCGGATACACCTAT
GACGGGACAGAAAAGAGATGTATTTGAGAAGAGTATTGAG

Done.