Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_14569

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 387

Length: 645
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27


Found at i:413 original size:30 final size:30

Alignment explanation


    Indices: 379--452  Score: 139
    Period size: 30  Copynumber: 2.5  Consensus size: 30

        369 GTCTACGCCA

                                          
        379 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
          1 CCATCGGCATCTCCTTCTCCTTCCTCTCCG

                                          
        409 CCATCGGCATCTCCTTCTCCTTCCTCTCCG
          1 CCATCGGCATCTCCTTCTCCTTCCTCTCCG

                 *        
        439 CCATCTGCATCTCC
          1 CCATCGGCATCTCC

        453 GGCTCCGGAA


Statistics
Matches: 43,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  30   43  1.00

ACGTcount: A:0.08, C:0.50, G:0.09, T:0.32


Consensus pattern (30 bp):   
CCATCGGCATCTCCTTCTCCTTCCTCTCCG

Done.