Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_01278

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2214
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23


Found at i:427 original size:18 final size:18

Alignment explanation


    Indices: 387--429  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        377 CCCTCGCTAT

                        *  *  
        387 TGAAGAAGAAGAGGAGGA
          1 TGAAGAAGAAGAAGAAGA

            *                 
        405 GGAAGAAGAAGAAGAAGA
          1 TGAAGAAGAAGAAGAAGA

                   
        423 TGAAGAA
          1 TGAAGAA

        430 CATCACGAGG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.56, C:0.00, G:0.40, T:0.05


Consensus pattern (18 bp):   
TGAAGAAGAAGAAGAAGA
Done.