Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_40576

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 241

Length: 402
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21


Found at i:33 original size:15 final size:15

Alignment explanation


    Indices: 13--43  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

          3 GGCACCAAAG

                    *      
         13 GCCGAGAAGAAGCCT
          1 GCCGAGAAAAAGCCT

                           
         28 GCCGAGAAAAAGCCT
          1 GCCGAGAAAAAGCCT

             
         43 G
          1 G

         44 TAGCAGAGAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.35, C:0.26, G:0.32, T:0.06


Consensus pattern (15 bp):   
GCCGAGAAAAAGCCT
Done.