Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Cotton_A_02694

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2814
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25


Found at i:696 original size:18 final size:18

Alignment explanation


    Indices: 661--697  Score: 56
    Period size: 18  Copynumber: 2.1  Consensus size: 18

        651 TAAAATCCGT

                        *     
        661 ACGTCCAACGATTACGTC
          1 ACGTCCAACGATGACGTC

                         *    
        679 ACGTCCAACGATGGCGTC
          1 ACGTCCAACGATGACGTC

             
        697 A
          1 A

        698 AAACGAAACC


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.27, C:0.32, G:0.22, T:0.19


Consensus pattern (18 bp):   
ACGTCCAACGATGACGTC
Done.